Showcase#

Discover what MolSysMT can do through practical, real-world examples:

Showcase

Description

Quickstart

Quick introductory tour of core tools, conversions, and data structures.

Barnase-Barstar

Assembly and curation of a protein-protein complex from the 1BRS PDB entry.

Dialanine Monte Carlo

Metropolis Monte Carlo conformational sampling of the peptide dihedral space.

Trajectory Analysis

Time-series analysis of RMSD, RMSF, radius of gyration, and conformations.

OpenMM Integration

Seamless workflow integration, energy minimization, and dynamics with OpenMM.

NGLView Interoperability

Interactive 3D visualization and analysis with NGLView as a molecular system form.