Index

A

add_anisotropy_ellipsoids() (molsysviewer.shapes.anisotropy_ellipsoids.AnisotropyEllipsoids method) (molsysviewer.shapes.AnisotropyEllipsoids method) (molsysviewer.shapes.ShapesManager method) add_channel_tube() (molsysviewer.shapes.channel_tubes.ChannelTubes method) (molsysviewer.shapes.ChannelTubes method) (molsysviewer.shapes.ShapesManager method) add_displacement_vectors() (molsysviewer.shapes.displacements.DisplacementVectors method) (molsysviewer.shapes.DisplacementVectors method) (molsysviewer.shapes.ShapesManager method) add_links() (molsysviewer.shapes.links.LinkShapes method) (molsysviewer.shapes.LinkShapes method) (molsysviewer.shapes.ShapesManager method) add_pharmacophore_features() (molsysviewer.shapes.pharmacophore.PharmacophoreShapes method) (molsysviewer.shapes.PharmacophoreShapes method) (molsysviewer.shapes.ShapesManager method) add_pocket_blob() (molsysviewer.shapes.pocket_blobs.PocketBlobs method) (molsysviewer.shapes.PocketBlobs method) (molsysviewer.shapes.ShapesManager method) add_pocket_surface() (molsysviewer.shapes.pocket_surfaces.PocketSurfaces method) (molsysviewer.shapes.PocketSurfaces method) (molsysviewer.shapes.ShapesManager method)

add_set_alpha_spheres() (molsysviewer.shapes.ShapesManager method) (molsysviewer.shapes.spheres.SphereShapes method) (molsysviewer.shapes.SphereShapes method) add_sphere() (molsysviewer.shapes.ShapesManager method) (molsysviewer.shapes.spheres.SphereShapes method) (molsysviewer.shapes.SphereShapes method) add_spheres() (molsysviewer.shapes.ShapesManager method) (molsysviewer.shapes.spheres.SphereShapes method) (molsysviewer.shapes.SphereShapes method) add_tetrahedra() (molsysviewer.shapes.ShapesManager method) (molsysviewer.shapes.Tetrahedra method) (molsysviewer.shapes.tetrahedra.Tetrahedra method) add_triangle_faces() (molsysviewer.shapes.ShapesManager method) (molsysviewer.shapes.triangle_faces.TriangleFaces method) (molsysviewer.shapes.TriangleFaces method) AnisotropyEllipsoids (class in molsysviewer.shapes) (class in molsysviewer.shapes.anisotropy_ellipsoids) autohide_controls (molsysviewer.widget.MolSysViewerWidget attribute)

C

ChannelTubes (class in molsysviewer.shapes) (class in molsysviewer.shapes.channel_tubes) clear() (molsysviewer.shapes.ShapesManager method) (molsysviewer.shapes.spheres.SphereShapes method) (molsysviewer.shapes.SphereShapes method)

clear_decorations() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method) controls_position (molsysviewer.widget.MolSysViewerWidget attribute) controls_position_fullscreen (molsysviewer.widget.MolSysViewerWidget attribute)

D

debug_js (molsysviewer.widget.MolSysViewerWidget attribute) delete() (molsysviewer.layers.Layer method) (molsysviewer.regions.Region method)

DisplacementVectors (class in molsysviewer.shapes) (class in molsysviewer.shapes.displacements)

E

enable_popout (molsysviewer.widget.MolSysViewerWidget attribute)

ensure_view() (in module molsysviewer.loaders.load_molsysmt)

G

get_camera_snapshot() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method)

H

hide() (molsysviewer.layers.Layer method) (molsysviewer.MolSysView method) (molsysviewer.regions.Region method) (molsysviewer.viewer.MolSysView method) (molsysviewer.whole.Whole method)

I

info() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method)

initial_messages (molsysviewer.widget.MolSysViewerWidget attribute) isolate() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method)

J

js_logs (molsysviewer.MolSysView property) (molsysviewer.viewer.MolSysView property)

L

Layer (class in molsysviewer.layers) layers (molsysviewer.MolSysView property) (molsysviewer.viewer.MolSysView property) LinkShapes (class in molsysviewer.shapes) (class in molsysviewer.shapes.links) load() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method)

load_from_molsysmt() (in module molsysviewer.loaders) (in module molsysviewer.loaders.load_molsysmt) load_html_in_notebook() (in module molsysviewer.thirds.jupyter) (in module molsysviewer.thirds.jupyter.load_html_in_notebook) load_user_presets() (in module molsysviewer.config) (in module molsysviewer.config.user_presets)

M

module molsysviewer molsysviewer.config molsysviewer.config.user_presets molsysviewer.demo molsysviewer.layers molsysviewer.loaders molsysviewer.loaders.load_molsysmt molsysviewer.new_view molsysviewer.regions molsysviewer.shapes molsysviewer.shapes.anisotropy_ellipsoids molsysviewer.shapes.channel_tubes molsysviewer.shapes.displacements molsysviewer.shapes.links molsysviewer.shapes.pharmacophore molsysviewer.shapes.pocket_blobs molsysviewer.shapes.pocket_surfaces molsysviewer.shapes.spheres molsysviewer.shapes.tetrahedra molsysviewer.shapes.triangle_faces molsysviewer.thirds molsysviewer.thirds.jupyter molsysviewer.thirds.jupyter.load_html_in_notebook molsysviewer.viewer molsysviewer.whole molsysviewer.widget MolSysView (class in molsysviewer) (class in molsysviewer.viewer) molsysviewer module molsysviewer.config module molsysviewer.config.user_presets module molsysviewer.demo module molsysviewer.layers module molsysviewer.loaders module

molsysviewer.loaders.load_molsysmt module molsysviewer.new_view module molsysviewer.regions module molsysviewer.shapes module molsysviewer.shapes.anisotropy_ellipsoids module molsysviewer.shapes.channel_tubes module molsysviewer.shapes.displacements module molsysviewer.shapes.links module molsysviewer.shapes.pharmacophore module molsysviewer.shapes.pocket_blobs module molsysviewer.shapes.pocket_surfaces module molsysviewer.shapes.spheres module molsysviewer.shapes.tetrahedra module molsysviewer.shapes.triangle_faces module molsysviewer.thirds module molsysviewer.thirds.jupyter module molsysviewer.thirds.jupyter.load_html_in_notebook module molsysviewer.viewer module molsysviewer.whole module molsysviewer.widget module MolSysViewerWidget (class in molsysviewer.widget)

N

new_complementary_region() (molsysviewer.regions.Region method) new_layer() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method)

new_region() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method) new_view() (in module molsysviewer) (in module molsysviewer.new_view)

P

PharmacophoreShapes (class in molsysviewer.shapes) (class in molsysviewer.shapes.pharmacophore) PocketBlobs (class in molsysviewer.shapes) (class in molsysviewer.shapes.pocket_blobs)

PocketSurfaces (class in molsysviewer.shapes) (class in molsysviewer.shapes.pocket_surfaces) popup_js_source (molsysviewer.widget.MolSysViewerWidget attribute)

R

Region (class in molsysviewer.regions) regions (molsysviewer.MolSysView property) (molsysviewer.viewer.MolSysView property)

reset_camera() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method) reset_viewer() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method)

S

set_camera_snapshot() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method) set_controls_visible() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method) set_representation() (molsysviewer.regions.Region method) (molsysviewer.whole.Whole method) set_tag() (molsysviewer.layers.Layer method) ShapesManager (class in molsysviewer.shapes)

show() (molsysviewer.layers.Layer method) (molsysviewer.MolSysView method) (molsysviewer.regions.Region method) (molsysviewer.viewer.MolSysView method) (molsysviewer.whole.Whole method) show_controls (molsysviewer.widget.MolSysViewerWidget attribute) SphereShapes (class in molsysviewer.shapes) (class in molsysviewer.shapes.spheres)

T

Tetrahedra (class in molsysviewer.shapes) (class in molsysviewer.shapes.tetrahedra)

TriangleFaces (class in molsysviewer.shapes) (class in molsysviewer.shapes.triangle_faces)

V

visible_atom_indices (molsysviewer.MolSysView property) (molsysviewer.viewer.MolSysView property)

visible_structure_indices (molsysviewer.MolSysView property) (molsysviewer.viewer.MolSysView property)

W

Whole (class in molsysviewer.whole)

write_html() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method)

Z

zoom() (molsysviewer.MolSysView method) (molsysviewer.viewer.MolSysView method)