API Physical and chemical properties#

get_area_buried(molecular_system[, element, ...])

Average area buried per residue group upon protein folding.

get_atomic_radius(molecular_system[, ...])

Atomic radius for each selected atom.

get_buried_fraction(molecular_system[, ...])

Fraction of residues observed in a buried environment.

get_charge(molecular_system[, element, ...])

Electric charge for the selected elements.

get_hydrophobicity(molecular_system[, ...])

Hydrophobicity index per residue group from a reference scale.

get_mass(molecular_system[, element, ...])

Total mass of the selected elements.

get_polarity(molecular_system[, element, ...])

Polarity index per residue group from a reference scale.

get_sasa(molecular_system[, element, ...])

Solvent-accessible surface area (SASA) per atom or residue group.

get_surface_area(molecular_system[, ...])

get_transmembrane_tendency(molecular_system)

Transmembrane tendency index per residue group.

get_volume(molecular_system[, selection, ...])

Side-chain volume per residue group from a reference scale.