API Topology

get_bondgraph(molecular_system[, ...])	Building a bond graph from a molecular system.
get_covalent_blocks(molecular_system[, ...])	Identifying covalent blocks (connected components) in a molecular system.
get_covalent_chains(molecular_system[, ...])	Building covalent chains given ordered selections for each position.
get_dihedral_quartets(molecular_system[, ...])	Finding atom quartets that define standard dihedral angles.
get_sequence_alignment(molecular_system[, ...])	Aligning sequences between a query and reference molecular system.
get_sequence_identity(molecular_system[, ...])	Calculating sequence identity between two molecular systems.