Show as balls and sticks#
import molsysmt as msm
from molsysmt import pyunitwizard as puw
import nglview as nv
import numpy as np
molsys = msm.convert(msm.systems['chicken villin HP35']['chicken_villin_HP35.h5msm'])
view = msm.view(molsys)
view.clear()
msm.thirds.nglview.show_as_cartoon(view, selection='group_index in [5,6,7,8,9,10]')
view
view = msm.view(molsys)
view.clear()
msm.thirds.nglview.show_as_balls_and_sticks(view, selection='all')
msm.thirds.nglview.show_as_cartoon(view, selection='group_index in [5,6,7,8,9,10]', color='purple')
view
view._ngl_msg_archive[-1]
{'component_index': 0,
'target': 'compList',
'type': 'call_method',
'methodName': 'addRepresentation',
'reconstruc_color_scheme': False,
'args': ['cartoon'],
'kwargs': {'sele': '@65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159',
'color': 'purple'}}