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Section Navigation
Introduction
What is MolSysViewer?
Installation
A molecular system in MolSysMT
Units (PyUnitWizard)
Configuration
Molecular system
Loading structures
Selections
Navigation between structures
Viewer
Atom masking
Camera & controls
Viewer UI
Reset & cleanup
Scene management
Visibility
Whole
Regions
Layers
Tags
Representations
Representation types
Presets
User presets
Overlays
Shapes
Spheres
Pockets (surfaces and blobs)
Channels (tubes)
Pharmacophore overlays
Anisotropy (ellipsoids/disks)
Links (networks)
Displacement vectors
Mesh primitives
Labels
Export & embedding
HTML Export
Sphinx HTML Embedding
Demo systems
Demo catalog
Troubleshooting
Viewer not loading
Docs embeds (HTML lite)
Selection issues
Performance
Cookbook
Pocket surface from alpha-spheres
Pocket blob (Gaussian field)
Channel tube
Pharmacophore overlay
Anisotropy ellipsoids/disks
HTML Export
Sphinx HTML Embedding
User guide
Introduction
Installation
Installation
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Installation
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