Molecular system

This section is the practical core of how MolSysViewer works.

MolSysViewer builds on MolSysMT, so the way you load, query, and modify what you see in the viewer follows MolSysMT’s definition of a molecular system: a topology (atoms, groups, chains, bonds, …) plus one or more structures (coordinates, optional box, optional time).

If you are new to these ideas, start with the first section, an overview on what a molecular system is for MolSysViewer, and then continue in order:

• A molecular system in MolSysMT
• Loading and inspection
• Topology
• Structures
• Quick info
• Selecting elements
• Getting attributes
• Setting attributes
• Removing elements and structures
• Adding elements
• Appending structures