UIBCDF Molecular Systems
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About

  • Introduction
    • Introduction
  • Installation
    • Last stable version
    • Last developing version
    • The source code
  • Showcase

Molecular Systems

  • Free particle
    • Brownian particle
    • Molecular system
    • Molecular dynamics
  • Harmonic well
    • Harmonic well potential
    • Molecular system
    • Molecular dynamics
  • Double Well
    • Double well potential
    • Molecular system
    • Molecular dynamics
  • Lennard Jones particles
    • The Lennard-Jones potential
    • Two LJ particles
      • Two LJ atoms in vacuum
      • Molecular system
      • Molecular dynamics

Tools

  • Langevin

Developer Guide

  • Introduction
    • Introduction
  • Names convention
    • Project name
      • GitHub repo and Conda env
      • README file and documents
      • Package
    • Modules, classes, methods, variables, and others programming elements.
      • Modules
      • Classes
      • Exceptions
      • Methods and functions
      • Variables, input arguments and parameters.
      • Constants
      • Not public methods and variables
  • Exceptions
    • NotImplementedMethodError
    • NotImplementedClassError
    • BadCallError
  • Documentation
    • Sphinx
    • Docstrings
      • Documenting a class
      • Documenting a method
    • Admonitions
      • Note
      • Did you know…?
      • It is suggested…
      • See also
      • Warning

Bibliography

  • Bibliography
UIBCDF Molecular Systems
  • »
  • Harmonic well

Harmonic well

  • Harmonic well potential
  • Molecular system
  • Molecular dynamics
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© Copyright 2020-2022, The Mexico City Childrens' Hospital Federico Gomez, its Unit of Research on Computational Biology and Drug Design, and authors | This project is licensed under the terms of the MIT license. See further details in the source code repository | Project based on the Computational Molecular Science Python Cookiecutter version 1.5.

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