Build

Add bonds	Adding new covalent bonds between atoms in a molecular system
Add missing bonds	Adding the missing bonds in a molecular system
Add missing heavy atoms	Adding the missing heavy atoms in a molecular system
Add missing hydrogens	Adding the missing hydrogen atoms in a molecular system
Add missing terminal_cappings	Adding the missing terminal cappings in a molecular system
Build peptide	Building a peptide
Define new chain	Define a new chain with new id and name attributes
Get disulfide bonds	Getting the disulfide bonds of a molecular system
Get missing bonds	Getting the missing bonds of a molecular system
Get missing heavy_atoms	Getting the missing heavy atoms of a molecular system
Get missing residues	Getting the missing residues of a molecular system
Get missing terminal_cappings	Getting the missing terminal cappings of a molecular system
Get non standard residues	Getting the non standard residues of a molecular system
Has hydrogens	Checking if a molecular system has hydrogen atoms
Is solvated	Checking if a molecular system is solvated
Make bioassembly	Making a bioassembly of a molecular system
Make water box	Making a water box system
Mutate	Mutating residues in a molecular system
Remove overlapping molecules	Removing overlapping molecules in a molecular system
Solvate	Solvating of a molecular system
Solve atoms with alternate location	Solving the coordinates of atoms with alternate locations in a molecular system