Get hydrophobicity

import molsysmt as msm

molsys = msm.convert(msm.systems['T4 lysozyme L99A']['181l.h5msm'], selection='molecule_type=="protein"')

hydrophob = msm.physchem.get_hydrophobicity(molsys, definition='eisenberg')

view = msm.view(molsys)
msm.thirds.nglview.set_color_by_value(view, values=hydrophob, mid_value=0.0)

view