%load_ext autoreload
%autoreload 2

import molsysmt as msm
import numpy as np

Rotate

molsys = msm.systems['Met-enkephalin']['met_enkephalin.h5msm']
molsys = msm.convert(molsys)

msm.view(molsys, standard=True)

rotation = [[1.0, 0.0, 0.0], [0.0, 0.0, -1.0], [0.0, 1.0, 0.0]]

molsys2 = msm.structure.rotate(molsys, rotation=rotation)

msm.view(msm.merge([molsys, molsys2]), standard=True)