Structure

Align principal axes	Aligning the principal inertia or geometric axes of a molecular system over a reference coordinates axes
Center	Centering a molecular system
Flip	Flip a molecular system over a plane
Get angles	Getting the angles between specific triplets of atoms of a molecular system
Get center	Getting the center of a molecular system
Get contacts	Getting the contact matrix of specific elements of a molecular system or two different molecular systems
Get dihedral_angles	Getting the dihedral angles of a molecular system
Get distances	Getting the distance between specific elements of a molecular system or two different molecular systems
Get least RMSD	Getting the least RMSD of a molecular system from a reference molecular system
Get maximum distances	Getting the maximum distance between specific groups of elements of a molecular system or two different molecular systems
Get minimum distances	Getting the minimum distance between specific groups of elements of a molecular system or two different molecular systems
Get neighbors	Getting the list of neighboring elements or groups of elements of a molecular system from specific elements or group of elements of another molecular system
Get principal axes	Getting the principal inertia or geometric axes of a molecular system
Get radius of gyration	Getting radius of gyration of a molecular system
Get RMSD	Getting the RMSD of a molecular system from a reference molecular system
Least RMSD align	Aligning the structure of a molecular system over a reference molecular system
Least RMSD fit	Fitting the structure of a molecular system over a reference molecular system
Move away	Moving away a molecular system from another molecular system
Principal component analysis	Principal component analysis
Rotate	Rotating a molecular system
Set dihedral angles	Setting new dihedral angles values in a molecular system
Shift dihedral angles	Shifting dihedral angles in a molecular system
Show contacts	Showing the graphical representation of the contact matrix of specific elements of a molecular system or two different molecular systems
Translate	Translating a molecular system