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  • About
  • Showcase
  • User guide
  • Developer guide
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  • molsysmt.attribute package
  • molsysmt.basic package
    • molsysmt.basic.selector package
  • molsysmt.build package
  • molsysmt.config package
  • molsysmt.element package
    • molsysmt.element.atom package
    • molsysmt.element.bond package
    • molsysmt.element.chain package
    • molsysmt.element.component package
    • molsysmt.element.entity package
      • molsysmt.element.entity.disaccharide package
      • molsysmt.element.entity.monosaccharide package
    • molsysmt.element.group package
      • molsysmt.element.group.amino_acid package
      • molsysmt.element.group.ion package
      • molsysmt.element.group.lipid package
      • molsysmt.element.group.nucleotide package
      • molsysmt.element.group.saccharide package
      • molsysmt.element.group.small_molecule package
      • molsysmt.element.group.terminal_capping package
      • molsysmt.element.group.water package
    • molsysmt.element.molecule package
      • molsysmt.element.molecule.disaccharide package
      • molsysmt.element.molecule.dna package
      • molsysmt.element.molecule.ion package
      • molsysmt.element.molecule.lipid package
      • molsysmt.element.molecule.monosaccharide package
      • molsysmt.element.molecule.peptide package
      • molsysmt.element.molecule.polysaccharide package
      • molsysmt.element.molecule.protein package
      • molsysmt.element.molecule.rna package
      • molsysmt.element.molecule.small_molecule package
      • molsysmt.element.molecule.water package
  • molsysmt.file package
    • molsysmt.file.handlers package
      • molsysmt.file.handlers.mdtraj_HDF5TrajectoryFile package
  • molsysmt.form package
    • molsysmt.form.MDAnalysis_Topology package
    • molsysmt.form.MDAnalysis_Universe package
    • molsysmt.form.XYZ package
    • molsysmt.form.bcifreader_PdbxContainers_DataContainer package
    • molsysmt.form.biopython_Seq package
    • molsysmt.form.biopython_SeqRecord package
    • molsysmt.form.file_bcif package
    • molsysmt.form.file_bcif_gz package
    • molsysmt.form.file_cif package
    • molsysmt.form.file_crd package
    • molsysmt.form.file_dcd package
    • molsysmt.form.file_gro package
    • molsysmt.form.file_h5 package
    • molsysmt.form.file_h5msm package
    • molsysmt.form.file_inpcrd package
    • molsysmt.form.file_mmtf package
    • molsysmt.form.file_mol2 package
    • molsysmt.form.file_msmpk package
    • molsysmt.form.file_pdb package
    • molsysmt.form.file_prmtop package
    • molsysmt.form.file_psf package
    • molsysmt.form.file_trjpk package
    • molsysmt.form.file_xtc package
    • molsysmt.form.file_xyznpy package
    • molsysmt.form.mdtraj_DCDTrajectoryFile package
    • molsysmt.form.mdtraj_HDF5TrajectoryFile package
    • molsysmt.form.mdtraj_Topology package
    • molsysmt.form.mdtraj_Trajectory package
    • molsysmt.form.mdtraj_XTCTrajectoryFile package
    • molsysmt.form.mmcif_PdbxContainers_DataContainer package
    • molsysmt.form.mmtf_MMTFDecoder package
    • molsysmt.form.molsysmt_CIFFileHandler package
    • molsysmt.form.molsysmt_GROFileHandler package
    • molsysmt.form.molsysmt_H5MSMFileHandler package
    • molsysmt.form.molsysmt_MolSys package
    • molsysmt.form.molsysmt_MolecularMechanics package
    • molsysmt.form.molsysmt_MolecularMechanicsDict package
    • molsysmt.form.molsysmt_PDBFileHandler package
    • molsysmt.form.molsysmt_Structures package
    • molsysmt.form.molsysmt_StructuresDict package
    • molsysmt.form.molsysmt_Topology package
    • molsysmt.form.networkx_Graph package
    • molsysmt.form.nglview_NGLWidget package
    • molsysmt.form.openmm_AmberInpcrdFile package
    • molsysmt.form.openmm_AmberPrmtopFile package
    • molsysmt.form.openmm_CharmmCrdFile package
    • molsysmt.form.openmm_CharmmPsfFile package
    • molsysmt.form.openmm_Context package
    • molsysmt.form.openmm_GromacsGroFile package
    • molsysmt.form.openmm_GromacsTopFile package
    • molsysmt.form.openmm_Modeller package
    • molsysmt.form.openmm_PDBFile package
    • molsysmt.form.openmm_Simulation package
    • molsysmt.form.openmm_State package
    • molsysmt.form.openmm_System package
    • molsysmt.form.openmm_Topology package
    • molsysmt.form.parmed_Structure package
    • molsysmt.form.pdbfixer_PDBFixer package
    • molsysmt.form.pytraj_Topology package
    • molsysmt.form.pytraj_Trajectory package
    • molsysmt.form.string_alphafold_id package
    • molsysmt.form.string_amino_acids_1 package
    • molsysmt.form.string_amino_acids_3 package
    • molsysmt.form.string_pdb_id package
    • molsysmt.form.string_pdb_text package
  • molsysmt.hbonds package
  • molsysmt.lib package
    • molsysmt.lib.pbc package
    • molsysmt.lib.structure package
  • molsysmt.molecular_dynamics package
  • molsysmt.molecular_mechanics package
  • molsysmt.native package
  • molsysmt.pbc package
  • molsysmt.physchem package
  • molsysmt.structure package
  • molsysmt.supported package
  • molsysmt.thirds package
    • molsysmt.thirds.nglview package
    • molsysmt.thirds.openmm package
      • molsysmt.thirds.openmm.forces package
      • molsysmt.thirds.openmm.platforms package
      • molsysmt.thirds.openmm.reporters package
    • molsysmt.thirds.tleap package
  • molsysmt.topology package
  • molsysmt.file.handlers package

molsysmt.file.handlers package#

Subpackages#

  • molsysmt.file.handlers.mdtraj_HDF5TrajectoryFile package
    • Submodules
    • molsysmt.file.handlers.mdtraj_HDF5TrajectoryFile.close_file module
      • close_file()
    • molsysmt.file.handlers.mdtraj_HDF5TrajectoryFile.open_file module
      • open_file()
    • Module contents

Module contents#

On this page
  • Subpackages
  • Module contents
© 2025, Liliana M. Moreno Vargas, Diego Prada Gracia and contributors | UIBCDF Lab at the Children's Hospital of Mexico Federico Gómez
MolSysMT is an open source project shared under an MIT license with a structure based on the Computational Molecular Science Python Cookiecutter version 1.5

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