molsysmt.form.XYZ package# Submodules# molsysmt.form.XYZ.add module# molsysmt.form.XYZ.add.add(to_item, item, atom_indices='all', structure_indices='all', skip_digestion=False)[source]# molsysmt.form.XYZ.append_structures module# molsysmt.form.XYZ.append_structures.append_structures(item, structure_id=None, time=None, coordinates=None, box=None, skip_digestion=False)[source]# molsysmt.form.XYZ.attributes module# molsysmt.form.XYZ.copy module# molsysmt.form.XYZ.copy.copy(item, skip_digestion=False)[source]# molsysmt.form.XYZ.extract module# molsysmt.form.XYZ.extract.extract(item, atom_indices='all', structure_indices='all', copy_if_all=True, skip_digestion=False)[source]# molsysmt.form.XYZ.get_rank_3_XYZ module# molsysmt.form.XYZ.get_rank_3_XYZ.get_rank_3_XYZ(item)[source]# molsysmt.form.XYZ.get_structural_attributes module# molsysmt.form.XYZ.get_structural_attributes.get_coordinates_from_atom(item, indices='all', structure_indices='all', skip_digestion=False)[source]# molsysmt.form.XYZ.get_structural_attributes.get_n_structures_from_system(item, structure_indices='all', skip_digestion=False)[source]# molsysmt.form.XYZ.get_topological_attributes module# molsysmt.form.XYZ.get_topological_attributes.get_atom_index_from_atom(item, indices='all', skip_digestion=False)[source]# molsysmt.form.XYZ.get_topological_attributes.get_n_atoms_from_system(item, skip_digestion=False)[source]# molsysmt.form.XYZ.has_attribute module# molsysmt.form.XYZ.has_attribute.has_attribute(molecular_system, attribute, include_none=False, skip_digestion=False)[source]# molsysmt.form.XYZ.is_form module# molsysmt.form.XYZ.is_form.is_form(item)[source]# molsysmt.form.XYZ.iterators module# class molsysmt.form.XYZ.iterators.StructuresIterator(molecular_system, atom_indices='all', start=0, interval=1, stop=None, chunk=1, structure_indices=None, skip_digestion=False)[source]# Bases: object class molsysmt.form.XYZ.iterators.TopologyIterator(molecular_system)[source]# Bases: object molsysmt.form.XYZ.merge module# molsysmt.form.XYZ.merge.merge(items, atom_indices='all', structure_indices='all', skip_digestion=False)[source]# molsysmt.form.XYZ.set module# molsysmt.form.XYZ.set.set_coordinates_to_atom(item, indices='all', structure_indices='all', value=None, skip_digestion=False)[source]# molsysmt.form.XYZ.set.set_coordinates_to_system(item, indices='all', structure_indices='all', value=None, skip_digestion=False)[source]# molsysmt.form.XYZ.to_XYZ module# molsysmt.form.XYZ.to_XYZ.to_XYZ(item, atom_indices='all', structure_indices='all', copy_if_all=True, skip_digestion=False)[source]# molsysmt.form.XYZ.to_file_xyznpy module# molsysmt.form.XYZ.to_file_xyznpy.to_file_xyznpy(item, atom_indices='all', structure_indices='all', output_filename=None, skip_digestion=False)[source]# molsysmt.form.XYZ.to_molsysmt_MolSys module# molsysmt.form.XYZ.to_molsysmt_MolSys.to_molsysmt_MolSys(item, atom_indices='all', structure_indices='all', skip_digestion=False)[source]# molsysmt.form.XYZ.to_molsysmt_MolecularMechanics module# molsysmt.form.XYZ.to_molsysmt_MolecularMechanics.to_molsysmt_MolecularMechanics(item, atom_indices='all', structure_indices='all', skip_digestion=False)[source]# molsysmt.form.XYZ.to_molsysmt_Structures module# molsysmt.form.XYZ.to_molsysmt_Structures.to_molsysmt_Structures(item, atom_indices='all', structure_indices='all', skip_digestion=False)[source]# molsysmt.form.XYZ.to_molsysmt_Topology module# molsysmt.form.XYZ.to_molsysmt_Topology.to_molsysmt_Topology(item, atom_indices='all', structure_indices='all', skip_digestion=False)[source]# Module contents#
