molsysmt.thirds package

Subpackages

• molsysmt.thirds.nglview package
  • Submodules
  • molsysmt.thirds.nglview.add_arrows module
    • add_arrows()
  • molsysmt.thirds.nglview.add_contacts module
    • add_contacts()
  • molsysmt.thirds.nglview.add_cylinders module
    • add_cylinders()
  • molsysmt.thirds.nglview.add_hbonds module
    • add_hbonds()
  • molsysmt.thirds.nglview.clear module
    • clear()
  • molsysmt.thirds.nglview.load_html_in_jupyter_notebook module
    • load_html_in_jupyter_notebook()
  • molsysmt.thirds.nglview.patching_nglview module
    • add_molsysmt_to_nglview()
  • molsysmt.thirds.nglview.set_color module
    • set_color()
  • molsysmt.thirds.nglview.set_color_by_value module
    • set_color_by_value()
  • molsysmt.thirds.nglview.show_as_balls_and_sticks module
    • show_as_balls_and_sticks()
  • molsysmt.thirds.nglview.show_as_cartoon module
    • show_as_cartoon()
  • molsysmt.thirds.nglview.show_as_licorice module
    • show_as_licorice()
  • molsysmt.thirds.nglview.show_as_surface module
    • show_as_surface()
  • molsysmt.thirds.nglview.show_gui module
    • show_gui()
  • molsysmt.thirds.nglview.standardize_view module
    • standardize_view()
  • molsysmt.thirds.nglview.write_html module
    • write_html()
  • Module contents
• molsysmt.thirds.openmm package
  • Subpackages
    • molsysmt.thirds.openmm.forces package
      • Submodules
      • molsysmt.thirds.openmm.forces.add_allowed_plane_region module
      • molsysmt.thirds.openmm.forces.add_allowed_z_region module
      • molsysmt.thirds.openmm.forces.add_constant_force module
      • molsysmt.thirds.openmm.forces.add_forbidden_plane_region module
      • molsysmt.thirds.openmm.forces.add_forbidden_z_region module
      • molsysmt.thirds.openmm.forces.add_harmonic_bond_force module
      • molsysmt.thirds.openmm.forces.add_plane_harmonic_restraint module
      • molsysmt.thirds.openmm.forces.add_point_harmonic_restraint module
      • molsysmt.thirds.openmm.forces.pin_atoms module
      • Module contents
    • molsysmt.thirds.openmm.platforms package
      • Submodules
      • molsysmt.thirds.openmm.platforms.platforms module
      • Module contents
    • molsysmt.thirds.openmm.reporters package
      • Submodules
      • molsysmt.thirds.openmm.reporters.MolSys module
      • molsysmt.thirds.openmm.reporters.StructuresDict module
      • molsysmt.thirds.openmm.reporters.h5msm module
      • molsysmt.thirds.openmm.reporters.tqdm module
      • Module contents
  • Module contents
• molsysmt.thirds.tleap package
  • Submodules
  • molsysmt.thirds.tleap.tleap module
    • TLeap
      • TLeap.add_commands()
      • TLeap.add_ions()
      • TLeap.check_unit()
      • TLeap.combine()
      • TLeap.export_script()
      • TLeap.get_total_charge()
      • TLeap.load_parameters()
      • TLeap.load_unit()
      • TLeap.make_sequence()
      • TLeap.new_section()
      • TLeap.run()
      • TLeap.save_unit()
      • TLeap.script
      • TLeap.set_global_parameter()
      • TLeap.solvate()
      • TLeap.transform()
  • Module contents

Module contents