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Section Navigation
User
API Basic
API Build
API Topology
API Structure
API Periodic Boundary Conditions
API Physical and chemical properties
API Molecular mechanics
API Hbonds
API Element
API Atom
API Group
API Amino acid
API Ion
API Lipid
API Nucleotide
API Saccharide
API Small Molecule
API Terminal Capping
API Water
API Component
API Molecule
API Chain
API Entity
API Bond
Form
biopython.Seq
biopython.SeqRecord
file:bcif
file:bcif.gz
file:cif
file:crd
file:dcd
file:gro
file:h5
file:h5msm
file:inpcrd
file:mmtf
file:mol2
file:msmpk
file:pdb
file:prmtop
file:psf
file:trjpk
file:xtc
file:xyznpy
MDAnalysis.Topology
MDAnalysis.Universe
mdtraj.DCDTrajectoryFile
mdtraj.HDF5TrajectoryFile
mdtraj.Topology
mdtraj.Trajectory
mdtraj.XTCTrajectoryFile
mmcif.PdbxContainers.DataContainer
mmtf.MMTFDecoder
molsysmt.CIFFileHandler
molsysmt.GROFileHandler
molsysmt.H5MSMFileHandler
molsysmt.MolecularMechanics
molsysmt.MolecularMechanicsDict
molsysmt.MolSys
molsysmt.PDBFileHandler
molsysmt.Structures
molsysmt.Structures
molsysmt.Topology
networkx.Graph
nglview_NGLWidget
openmm.AmberInpcrdFile
openmm.AmberPrmtopFile
openmm.CharmmCrdFile
openmm.CharmmPsfFile
openmm.Context
openmm.GromacsGroFile
openmm.GromacsGroFile
openmm.Modeller
openmm.PDBFile
openmm.Simulation
openmm.State
openmm.System
openmm.Topology
parmed.Structure
pdbfixer.PDBFixer
pytraj.Topology
pytraj.Trajectory
strubg:alphafold_id
string:aminoacids1
string:aminoacids3
string:pdb_id
string:pdb_text
XYZ
Thirds
API NGLView
OpenMM
API Forces
API Forces
API Forces
Developer
_private
Exceptions
API documentation
Form
openmm.Topology
molsysmt.form.openmm_Topology.get_structural_attributes
molsysmt.form.openmm_Topology.get_structural_attributes
#
Functions
get_box_from_system
(item[, ...])
