mdtraj.Topology#

`add`(to_item, item[, atom_indices, ...])
`append_structures`(item[, structure_id, ...])
`copy`(item[, skip_digestion])
`extract`(item[, atom_indices, ...])
`get_structural_attributes`
`get_topological_attributes`
`has_attribute`(molecular_system, attribute[, ...])
`is_form`(item)
`TopologyIterator`(molecular_system)
`merge`(items[, atom_indices, ...])
`set`
`to_file_top`
`to_mdtraj_Trajectory`
`to_molsysmt_Topology`
`to_openmm_Topology`
`to_parmed_GromacsTopologyFile`
`to_parmed_Structure`
`to_string_amino_acids_1`
`to_string_amino_acids_3`