molsysmt.Topology#

add(to_item, item[, keep_ids, skip_digestion])

append_structures(item[, structure_id, ...])

copy(item[, skip_digestion])

extract(item[, atom_indices, ...])

get_topological_attributes

has_attribute(molecular_system, attribute[, ...])

Checking instance-aware attribute availability for native topology.

is_form(item)

TopologyIterator(molecular_system[, ...])

merge(items[, atom_indices, keep_ids, ...])

set

to_file_h5msm

to_file_pdb

to_file_psf

to_mdtraj_Topology

to_networkx_Graph

to_nglview_NGLWidget

to_openmm_Topology

to_parmed_Structure

to_pytraj_Topology

to_string_amino_acids_1

to_string_amino_acids_3

to_string_pdb_text