string:pdb_text# add(to_item, item[, atom_indices, ...]) append_structures(item[, structure_id, ...]) copy(item[, skip_digestion]) extract(item[, atom_indices, ...]) get_structural_attributes get_topological_attributes has_attribute(molecular_system, attribute[, ...]) is_form(string) StructuresIterator(molecular_system[, ...]) TopologyIterator(molecular_system) merge(items[, atom_indices, ...]) set to_file_pdb to_mdtraj_Topology to_mdtraj_Trajectory to_molsysmt_MolSys to_molsysmt_PDBFileHandler to_molsysmt_Structures to_molsysmt_Topology to_nglview_NGLWidget to_openmm_Modeller to_openmm_PDBFile to_openmm_Simulation to_openmm_System to_openmm_System to_openmm_Topology to_pdbfixer_PDBFixer