add(to_item, item[, atom_indices, ...])
|
|
append_structures(item[, structure_id, ...])
|
|
copy(item[, output_filename, skip_digestion])
|
|
download([pdb_id, output_filename, ...])
|
|
extract(item[, atom_indices, ...])
|
|
get
|
|
has_atoms_with_alternate_locations(filename)
|
|
has_attribute(molecular_system, attribute[, ...])
|
|
is_form(item)
|
|
StructuresIterator(molecular_system[, ...])
|
|
TopologyIterator(molecular_system)
|
|
merge(items[, atom_indices, ...])
|
|
replace_HETATM_by_ATOM_in_terminal_cappings(...)
|
|
set
|
|
to_file_mol2(item[, atom_indices, ...])
|
|
to_MDAnalysis_topology_PDBParser
|
|
to_MDAnalysis_Topology(item[, atom_indices, ...])
|
|
to_MDAnalysis_Universe(item[, atom_indices, ...])
|
|
to_mdtraj_PDBTrajectoryFile(item[, ...])
|
|
to_mdtraj_Topology(item[, atom_indices, ...])
|
|
to_mdtraj_Trajectory(item[, atom_indices, ...])
|
|
to_molsysmt_MolSys(item[, atom_indices, ...])
|
|
to_molsysmt_PDBFileHandler(item[, ...])
|
|
to_molsysmt_Structures(item[, atom_indices, ...])
|
|
to_molsysmt_Topology(item[, atom_indices, ...])
|
|
to_nglview_NGLWidget(item[, atom_indices, ...])
|
|
to_openmm_Modeller(item[, atom_indices, ...])
|
|
to_openmm_PDBFile(item[, atom_indices, ...])
|
|
to_openmm_Simulation(item[, atom_indices, ...])
|
|
to_openmm_System(item[, atom_indices, ...])
|
|
to_openmm_Topology(item[, atom_indices, ...])
|
|
to_parmed_Structure(item[, atom_indices, ...])
|
|
to_pdbfixer_PDBFixer(item[, atom_indices, ...])
|
|
to_pytraj_Topology(item[, atom_indices, ...])
|
|
to_pytraj_Trajectory(item[, atom_indices, ...])
|
|
to_string_pdb_text(item[, atom_indices, ...])
|
|
