add(to_item, item[, atom_indices, ...])
|
|
append_structures(item[, structure_id, ...])
|
|
copy(item[, output_filename, skip_digestion])
|
|
download([pdb_id, output_filename, ...])
|
Downloading a remote pdb file from a wwPDB partner. |
extract(item[, atom_indices, ...])
|
|
has_atoms_with_alternate_locations(filename)
|
Returning whether a PDB file contains alternate-location records. |
has_attribute(molecular_system, attribute[, ...])
|
|
is_form(item)
|
|
StructuresIterator(molecular_system[, ...])
|
|
TopologyIterator(molecular_system)
|
|
merge(items[, atom_indices, ...])
|
|
replace_HETATM_by_ATOM_in_terminal_cappings(...)
|
|
set
|
|
to_file_mol2
|
|
to_MDAnalysis_topology_PDBParser
|
|
to_MDAnalysis_Topology
|
|
to_MDAnalysis_Universe
|
|
to_mdtraj_PDBTrajectoryFile
|
|
to_mdtraj_Topology
|
|
to_mdtraj_Trajectory
|
|
to_molsysmt_MolSys
|
|
to_molsysmt_PDBFileHandler
|
|
to_molsysmt_Structures
|
|
to_molsysmt_Topology
|
|
to_nglview_NGLWidget
|
|
to_openmm_Modeller
|
|
to_openmm_PDBFile
|
|
to_openmm_Simulation
|
|
to_openmm_System
|
|
to_openmm_Topology
|
|
to_parmed_Structure
|
|
to_pdbfixer_PDBFixer
|
|
to_pytraj_Topology
|
|
to_pytraj_Trajectory
|
|
to_string_pdb_text
|
|
