molsysmt.MolSys#

`add_bonds`(item, bonded_atom_pairs[, ...])
`add`(to_item, from_item[, atom_indices, ...])
`append_structures`(to_item[, item, ...])
`copy`(item[, skip_digestion])
`extract`(item[, atom_indices, ...])
`get_mechanical_attributes`
`get_structural_attributes`
`get_topological_attributes`
`has_attribute`(molecular_system, attribute[, ...])	Checking instance availability by composing native form contracts.
`is_form`(item)
`StructuresIterator`(molecular_system[, ...])
`TopologyIterator`(molecular_system[, ...])
`merge`(items[, atom_indices, ...])
`set`
`to_biopython_Seq`
`to_biopython_SeqRecord`
`to_file_h5msm`
`to_file_pdb`
`to_file_psf`
`to_mdtraj_Topology`
`to_mdtraj_Trajectory`
`to_molsysmt_MolecularMechanicsDict`
`to_molsysmt_MolecularMechanics`
`to_molsysmt_Structures`
`to_molsysmt_Topology`
`to_networkx_Graph`
`to_nglview_NGLWidget`
`to_openmm_Context`
`to_openmm_Modeller`
`to_openmm_Simulation`
`to_openmm_System`
`to_openmm_Topology`
`to_pdbfixer_PDBFixer`
`to_pytraj_Topology`
`to_pytraj_Trajectory`
`to_string_amino_acids_1`
`to_string_amino_acids_3`
`to_string_pdb_text`
`to_XYZ`