MolSysViewer: The Native Eyes

Visualization is not just a final step; it is part of the analytical loop. While MolSysMT supports many third-party viewers, its native partner is MolSysViewer.

1. More than a Viewer

MolSysViewer is a high-performance web-based visualizer (based on Mol*) that has been engineered to work in total symbiosis with MolSysMT. When you call msm.view(), you are not just looking at a picture; you are opening a live portal to your data.

2. The MolSysMT Addon

The true power of this integration lies in the MolSysMT Addon. Inside the viewer’s GUI, you will find a specialized panel that allows you to:

• Visual Selection: Click on residues to generate MolSysMT selection strings automatically.

• Live Properties: Audit attributes (like B-factors or charges) by coloring the structure in real-time.

• Trajectory Player: Scrub through thousands of frames with zero lag, thanks to our shared H5MSM streaming technology.

3. Bidirectional Flow

MolSysMT and MolSysViewer share a common language. A selection made in your Python script is instantly highlighted in the viewer, and a group picked with your mouse in the viewer can be brought back into your Python script as a variable.

Where is the documentation?

For a deep dive into every button and feature of the GUI addon, visit the MolSysViewer User Guide.

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