The Native World

Welcome to The Native World, the architectural home of MolSysMT’s native object representations, containers, data dictionaries, file handlers, and storage formats. While MolSysMT seamlessly interoperates with dozens of third-party libraries and external file formats, its core engine relies on native data structures designed for high flexibility, fast querying, and lossy-free serialization.

The 15 native forms in MolSysMT are organized below into three primary categories: Classes, Files, and File Handlers.

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Contents

• Classes
  Native Python classes and declarative dictionaries representing molecular systems, topology, structures, molecular mechanics, and visualization schemas.

• Files
  Native file formats developed for high-performance storage and trajectory streaming.

• File Handlers
  Low-level native streaming handlers for reading and writing molecular file formats.