Supported

Welcome to Supported, the foundational module detailing MolSysMT’s interoperability matrix across data forms, physical-chemical data, molecular mechanics, selection syntaxes, 3D visualization engines, and third-party ecosystem bridges.

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Contents

• Forms
  Matrix of supported data representations spanning object classes, disk files, and string inputs.

• Physical-Chemical Data
  Supported physical-chemical properties, atomic attributes, element classifications, and physical units.

• Molecular Mechanics Data
  Supported force fields, water models, implicit solvents, and non-bonded interaction parameters.

• Selection Syntaxes
  Supported atom and residue selection syntaxes (MolSysMT, AMBER, MDAnalysis, PyTraj) and configured shortcuts.

• Viewers
  Supported 3D rendering backends (MolSysViewer, NGLView, Py3Dmol) and environment compatibility.

• Third-Party Bridges
  Supported third-party library bridges (MDTraj, OpenMM, MDAnalysis, ParmEd, PyTraj, BioPython, OpenFF, RDKit, NetworkX).