Path D - Module 32: Visualizing Interaction Matrices

Generate a contact map of the protein-lipid interface. In this module, you will learn to use show_contacts() for large membrane systems.

import molsysmt as msm
from molsysmt import systems
system = [systems['POPC membrane']['popc_membrane.h5msm'], systems['POPC membrane']['popc_membrane.dcd']]
msm.structure.show_contacts(system, selection='molecule_type=="protein"', selection_2='molecule_type=="lipid"')